C57BL/6JCya-Upf1em1flox/Cya
Common Name:
Upf1-flox
Product ID:
S-CKO-04773
Background:
C57BL/6JCya
Product Type
Age
Genotype
Sex
Quantity
Price:
Contact for Pricing
Basic Information
Strain Name
Upf1-flox
Strain ID
CKOCMP-19704-Upf1-B6J-VA
Gene Name
Product ID
S-CKO-04773
Gene Alias
B430202H16Rik; NORF1; PNORF-1; Rent1; Upflp
Background
C57BL/6JCya
NCBI ID
Modification
Conditional knockout
Chromosome
8
Phenotype
Document
Application
--
Note: When using this mouse strain in a publication, please cite “C57BL/6JCya-Upf1em1flox/Cya mice (Catalog S-CKO-04773) were purchased from Cyagen.”
Strain Description
Ensembl Number
ENSMUST00000075666
NCBI RefSeq
NM_001122829.2
Target Region
Exon 2~3
Size of Effective Region
~1.7 kb
Detailed Document
Overview of Gene Research
Upf1, also known as Up-frameshift protein 1, is a vital controller for transcripts. It is a key element in mRNA decay pathways, especially in nonsense-mediated mRNA decay (NMD), where it specifically degrades premature termination codon (PTC)-containing products. Additionally, it may act as an E3 ligase to degrade target proteins independently of mRNA decay, protecting cells from misfolded polypeptides. NMD and other UPF1-mediated RNA decay pathways are crucial for maintaining cellular homeostasis and gene expression regulation [1,3,6].
In cancer, UPF1 is often downregulated, and its low expression is correlated with poor prognosis. Dysfunction of UPF1 leads to the failure of NMD, contributing to tumor initiation and progression, suggesting it could be a potential biomarker for cancer diagnosis and treatment [2,7]. In terms of RNA regulation, Upf1 binds to poorly translated and untranslated open reading frames (ORFs), regulating mRNA stability through an exon-junction complex (EJC)-independent nonsense-mediated decay pathway called ORF-mediated decay (OMD) [5]. Also, it is involved in structure-mediated RNA decay along with G3BP1, and viral RNAs are susceptible to Upf1-mediated RNA decay pathways, though viruses have evolved ways to escape [4,8].
In conclusion, Upf1 is essential for mRNA surveillance and protein quality control. Its role in NMD and other decay pathways is crucial for cellular function. The study of Upf1 in cancer through various models has revealed its potential as a biomarker, and its functions in mRNA stability regulation and viral RNA targeting highlight its broad biological significance.
References:
1. Staszewski, Jacek, Lazarewicz, Natalia, Konczak, Julia, Migdal, Iwona, Maciaszczyk-Dziubinska, Ewa. 2023. UPF1-From mRNA Degradation to Human Disorders. In Cells, 12, . doi:10.3390/cells12030419. https://pubmed.ncbi.nlm.nih.gov/36766761/
2. Chen, Bin-Lie, Wang, Huai-Ming, Lin, Xiao-Sheng, Zeng, Yong-Ming. . UPF1: a potential biomarker in human cancers. In Frontiers in bioscience (Landmark edition), 26, 76-84. doi:10.52586/4925. https://pubmed.ncbi.nlm.nih.gov/34027651/
3. Lavysh, Daria, Neu-Yilik, Gabriele. 2020. UPF1-Mediated RNA Decay-Danse Macabre in a Cloud. In Biomolecules, 10, . doi:10.3390/biom10070999. https://pubmed.ncbi.nlm.nih.gov/32635561/
4. Fischer, Joseph W, Busa, Veronica F, Shao, Yue, Leung, Anthony K L. 2020. Structure-Mediated RNA Decay by UPF1 and G3BP1. In Molecular cell, 78, 70-84.e6. doi:10.1016/j.molcel.2020.01.021. https://pubmed.ncbi.nlm.nih.gov/32017897/
5. Musaev, Damir, Abdelmessih, Mario, Vejnar, Charles E, Takacs, Carter M, Giraldez, Antonio J. 2024. UPF1 regulates mRNA stability by sensing poorly translated coding sequences. In Cell reports, 43, 114074. doi:10.1016/j.celrep.2024.114074. https://pubmed.ncbi.nlm.nih.gov/38625794/
6. Hwang, Hyun Jung, Park, Yeonkyoung, Kim, Yoon Ki. 2021. UPF1: From mRNA Surveillance to Protein Quality Control. In Biomedicines, 9, . doi:10.3390/biomedicines9080995. https://pubmed.ncbi.nlm.nih.gov/34440199/
7. Temaj, Gazmend, Chichiarelli, Silvia, Telkoparan-Akillilar, Pelin, Hadziselimovic, Rifat, Saso, Luciano. 2024. Advances in molecular function of UPF1 in Cancer. In Archives of biochemistry and biophysics, 756, 109989. doi:10.1016/j.abb.2024.109989. https://pubmed.ncbi.nlm.nih.gov/38621446/
8. May, Jared P, Simon, Anne E. 2020. Targeting of viral RNAs by Upf1-mediated RNA decay pathways. In Current opinion in virology, 47, 1-8. doi:10.1016/j.coviro.2020.11.002. https://pubmed.ncbi.nlm.nih.gov/33341474/
Quality Control Standard
Sperm Test
Pre-cryopreservation: Measurement of sperm concentration, determination of sperm viability.
Post-cryopreservation: A vial of cryopreserved sperms is selected for in-vitro fertilization from each batch.
Environmental Standards:SPF
Available Region:Global
Source:Cyagen