C57BL/6NCya-Gpatch1em1flox/Cya
Common Name:
Gpatch1-flox
Product ID:
S-CKO-13710
Background:
C57BL/6NCya
Product Type
Age
Genotype
Sex
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Basic Information
Strain Name
Gpatch1-flox
Strain ID
CKOCMP-67471-Gpatch1-B6N-VA
Gene Name
Product ID
S-CKO-13710
Gene Alias
1300003A17Rik; ECGP; Gpatc1
Background
C57BL/6NCya
NCBI ID
Modification
Conditional knockout
Chromosome
7
Phenotype
Document
Application
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Note: When using this mouse strain in a publication, please cite “C57BL/6NCya-Gpatch1em1flox/Cya mice (Catalog S-CKO-13710) were purchased from Cyagen.”
Strain Description
Ensembl Number
ENSMUST00000079693
NCBI RefSeq
NM_026181
Target Region
Exon 4~5
Size of Effective Region
~2.2 kb
Detailed Document
Overview of Gene Research
GPATCH1, a G-patch family protein, is involved in pre-mRNA splicing and has been associated with multiple biological processes and diseases. It plays a role in maintaining spliceosome fidelity by recognizing aberrant 5' splice site conformations and recruiting DHX35 helicase to dissociate the U2/branch site helix, priming spliceosomes bound to aberrant substrates for disassembly [1,6]. It also suppresses the usage of weak nearby cryptic/alternative splice sites, promoting splicing fidelity [2].
Genome-wide association studies have linked GPATCH1 to several diseases. SNPs in GPATCH1 are associated with colorectal cancer in Taiwanese populations [3]. In Japanese women with osteoporosis, a SNP in GPATCH1 (rs10416265) is associated with vertebral fracture prevalence, and a genetic risk score including this SNP can help identify at-risk individuals [4]. In a genome-wide association study of indigenous chicken in Rwanda, GPATCH1 was identified near SNPs associated with body weight [5]. Additionally, GPATCH1 has been identified as a novel candidate gene in congenital heart disease through single-cell reconstruction and mutation enrichment analysis [7].
In conclusion, GPATCH1 is an important gene in maintaining splicing fidelity. Its association with diseases such as colorectal cancer, osteoporosis, and congenital heart disease, as revealed through genetic association studies, highlights its significance in understanding the molecular mechanisms of these diseases. Research on GPATCH1 provides insights into disease-related biological processes and may potentially contribute to the development of preventive and therapeutic strategies.
References:
1. Li, Yi, Fischer, Paulina, Wang, Mengjiao, Hurt, Ed, Cheng, Jingdong. 2025. Structural insights into spliceosome fidelity: DHX35-GPATCH1- mediated rejection of aberrant splicing substrates. In Cell research, 35, 296-308. doi:10.1038/s41422-025-01084-w. https://pubmed.ncbi.nlm.nih.gov/40016598/
2. Sales-Lee, Jade, Perry, Daniela S, Bowser, Bradley A, Roy, Scott W, Madhani, Hiten D. 2021. Coupling of spliceosome complexity to intron diversity. In Current biology : CB, 31, 4898-4910.e4. doi:10.1016/j.cub.2021.09.004. https://pubmed.ncbi.nlm.nih.gov/34555349/
3. Bau, Da-Tian, Liu, Ting-Yuan, Yang, Jai-Sing, Chang, Yen-Ting, Tsai, Fuu-Jen. 2024. Characterizing Genetic Susceptibility to Colorectal Cancer in Taiwan Through Genome-Wide Association Study. In Molecular carcinogenesis, 64, 25-32. doi:10.1002/mc.23823. https://pubmed.ncbi.nlm.nih.gov/39392253/
4. Zhou, Heying, Mori, Seijiro, Ishizaki, Tatsuro, Kubo, Michiaki, Ito, Hideki. 2016. Genetic risk score based on the prevalence of vertebral fracture in Japanese women with osteoporosis. In Bone reports, 5, 168-172. doi:10.1016/j.bonr.2016.07.001. https://pubmed.ncbi.nlm.nih.gov/28580384/
5. Habimana, Richard, Ngeno, Kiplangat, Okeno, Tobias Otieno, Keambou Tiambo, Christian, Yao, Nasser Kouadio. 2021. Genome-Wide Association Study of Growth Performance and Immune Response to Newcastle Disease Virus of Indigenous Chicken in Rwanda. In Frontiers in genetics, 12, 723980. doi:10.3389/fgene.2021.723980. https://pubmed.ncbi.nlm.nih.gov/34745207/
6. Soni, Komal, Horvath, Attila, Dybkov, Olexandr, Fischer, Tamás, Sinning, Irmgard. 2025. Structures of aberrant spliceosome intermediates on their way to disassembly. In Nature structural & molecular biology, , . doi:10.1038/s41594-024-01480-7. https://pubmed.ncbi.nlm.nih.gov/39833470/
7. Tambi, Richa, Zehra, Binte, Nandkishore, Sharon, Uddin, Mohammed, Berdiev, Bakhrom K. 2023. Single-cell reconstruction and mutation enrichment analysis identifies dysregulated cardiomyocyte and endothelial cells in congenital heart disease. In Physiological genomics, 55, 634-646. doi:10.1152/physiolgenomics.00070.2023. https://pubmed.ncbi.nlm.nih.gov/37811720/
Quality Control Standard
Sperm Test
Pre-cryopreservation: Measurement of sperm concentration, determination of sperm viability.
Post-cryopreservation: A vial of cryopreserved sperms is selected for in-vitro fertilization from each batch.
Environmental Standards:SPF
Available Region:Global
Source:Cyagen