C57BL/6JCya-Ddx21em1flox/Cya
Common Name:
Ddx21-flox
Product ID:
S-CKO-17839
Background:
C57BL/6JCya
Product Type
Age
Genotype
Sex
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Basic Information
Strain Name
Ddx21-flox
Strain ID
CKOCMP-56200-Ddx21-B6J-VB
Gene Name
Product ID
S-CKO-17839
Gene Alias
D10Ertd645e; D10Wsu42e
Background
C57BL/6JCya
NCBI ID
Modification
Conditional knockout
Chromosome
10
Phenotype
Document
Application
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Note: When using this mouse strain in a publication, please cite “C57BL/6JCya-Ddx21em1flox/Cya mice (Catalog S-CKO-17839) were purchased from Cyagen.”
Strain Description
Ensembl Number
ENSMUST00000045866
NCBI RefSeq
NM_019553
Target Region
Exon 2~11
Size of Effective Region
~13.3 kb
Detailed Document
Overview of Gene Research
Ddx21, a member of the DEAD-box RNA helicase family, is pivotal in RNA metabolism, participating in ribosomal RNA (rRNA) processing, transcription, and translation. It is involved in various biological processes such as mRNA transcription, alternative splicing, and is associated with pathways related to tissue differentiation, ribosome biogenesis, and genome stability. Its functions are crucial for normal cellular activities and its dysregulation may lead to diseases like cancer [1,2,3,5,8].
Glucose binds to the ATP-binding domain of Ddx21, altering its conformation, inhibiting helicase activity, and dissociating Ddx21 dimers. This glucose-induced change promotes the splicing of pro-differentiation genes during epidermal differentiation [1]. Ddx21 interacts with METTL3 for co-recruitment to chromatin via R-loops recognition, facilitating m6A deposition on nascent RNA at transcription termination regions, thus promoting transcription termination and genome stability [2]. SLERT lncRNA interacts with Ddx21, loosening Ddx21-formed rings around Pol I complexes and relieving the suppression on pre-rRNA transcription [3]. In colorectal cancer, phase-separated Ddx21 binds to the MCM5 gene locus, activating the EMT pathway and promoting metastasis [4]. Ddx21 also coordinates multiple steps of ribosome biogenesis, promoting rRNA transcription, processing, and modification in the nucleolus, and facilitating P-TEFb release from 7SK snRNP in the nucleoplasm to promote transcription of target genes [5]. In breast cancer cells, PARP-1 activation by snoRNAs leads to DDX21 ADP-ribosylation, which is essential for its nucleolar localization and promotion of rDNA transcription [6]. In acute myeloid leukaemia, super-enhancer-driven IGF2BP2 and IGF2BP3 upregulate Ddx21 in an m6A-dependent manner, and Ddx21 promotes cell proliferation by recruiting YBX1 to trigger ULK1 expression [7].
In summary, Ddx21 is essential for RNA-related biological processes, with its function being modulated by various factors. Studies, some potentially involving gene knockout models, have revealed its significance in tissue differentiation, cancer progression, and ribosome biogenesis. Understanding Ddx21's function provides insights into disease mechanisms and may offer potential therapeutic targets for related diseases [1,2,3,4,5,6,7,8].
References:
1. Miao, Weili, Porter, Douglas F, Lopez-Pajares, Vanessa, Nolan, Garry P, Khavari, Paul A. . Glucose dissociates DDX21 dimers to regulate mRNA splicing and tissue differentiation. In Cell, 186, 80-97.e26. doi:10.1016/j.cell.2022.12.004. https://pubmed.ncbi.nlm.nih.gov/36608661/
2. Hao, Jin-Dong, Liu, Qian-Lan, Liu, Meng-Xia, Yang, Yun-Gui, Ren, Jie. 2024. DDX21 mediates co-transcriptional RNA m6A modification to promote transcription termination and genome stability. In Molecular cell, 84, 1711-1726.e11. doi:10.1016/j.molcel.2024.03.006. https://pubmed.ncbi.nlm.nih.gov/38569554/
3. Xing, Yu-Hang, Yao, Run-Wen, Zhang, Yang, Yang, Li, Chen, Ling-Ling. . SLERT Regulates DDX21 Rings Associated with Pol I Transcription. In Cell, 169, 664-678.e16. doi:10.1016/j.cell.2017.04.011. https://pubmed.ncbi.nlm.nih.gov/28475895/
4. Gao, Huabin, Wei, Huiting, Yang, Yang, Wang, Jia, Han, Anjia. 2023. Phase separation of DDX21 promotes colorectal cancer metastasis via MCM5-dependent EMT pathway. In Oncogene, 42, 1704-1715. doi:10.1038/s41388-023-02687-6. https://pubmed.ncbi.nlm.nih.gov/37029300/
5. Calo, Eliezer, Flynn, Ryan A, Martin, Lance, Chang, Howard Y, Wysocka, Joanna. 2014. RNA helicase DDX21 coordinates transcription and ribosomal RNA processing. In Nature, 518, 249-53. doi:10.1038/nature13923. https://pubmed.ncbi.nlm.nih.gov/25470060/
6. Kim, Dae-Seok, Camacho, Cristel V, Nagari, Anusha, Challa, Sridevi, Kraus, W Lee. 2019. Activation of PARP-1 by snoRNAs Controls Ribosome Biogenesis and Cell Growth via the RNA Helicase DDX21. In Molecular cell, 75, 1270-1285.e14. doi:10.1016/j.molcel.2019.06.020. https://pubmed.ncbi.nlm.nih.gov/31351877/
7. Zhao, Yanchun, Zhou, Yutong, Qian, Yu, Sun, Jie, Jin, Jie. . m6A-dependent upregulation of DDX21 by super-enhancer-driven IGF2BP2 and IGF2BP3 facilitates progression of acute myeloid leukaemia. In Clinical and translational medicine, 14, e1628. doi:10.1002/ctm2.1628. https://pubmed.ncbi.nlm.nih.gov/38572589/
8. Xiao, Yalan, Fan, Jiankun, Li, Zhigang, Hou, Yu. 2024. DDX21 at the Nexus of RNA Metabolism, Cancer Oncogenesis, and Host-Virus Crosstalk: Decoding Its Biomarker Potential and Therapeutic Implications. In International journal of molecular sciences, 25, . doi:10.3390/ijms252413581. https://pubmed.ncbi.nlm.nih.gov/39769343/
Quality Control Standard
Sperm Test
Pre-cryopreservation: Measurement of sperm concentration, determination of sperm viability.
Post-cryopreservation: A vial of cryopreserved sperms is selected for in-vitro fertilization from each batch.
Environmental Standards:SPF
Available Region:Global
Source:Cyagen