C57BL/6JCya-Ddx21em1flox/Cya
Common Name:
Ddx21-flox
Product ID:
S-CKO-11974
Background:
C57BL/6JCya
Product Type
Age
Genotype
Sex
Quantity
Price:
Contact for Pricing
Basic Information
Strain Name
Ddx21-flox
Strain ID
CKOCMP-56200-Ddx21-B6J-VA
Gene Name
Product ID
S-CKO-11974
Gene Alias
D10Ertd645e; D10Wsu42e
Background
C57BL/6JCya
NCBI ID
Modification
Conditional knockout
Chromosome
10
Phenotype
Document
Application
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Note: When using this mouse strain in a publication, please cite “C57BL/6JCya-Ddx21em1flox/Cya mice (Catalog S-CKO-11974) were purchased from Cyagen.”
Strain Description
Ensembl Number
ENSMUST00000045866
NCBI RefSeq
NM_019553
Target Region
Exon 3~5
Size of Effective Region
~2.6 kb
Detailed Document
Overview of Gene Research
Ddx21, a member of the DEAD-box RNA helicase family, plays a pivotal role in multiple aspects of RNA metabolism, including ribosomal RNA (rRNA) processing, transcription, and translation [8]. It is involved in various biological processes such as tissue differentiation, mRNA splicing, and is associated with pathways like epithelial-mesenchymal transition (EMT) in cancer progression. Its functions are crucial for maintaining genome stability and normal cellular activities. Genetic models, especially knockout (KO) and conditional knockout (CKO) mouse models, could potentially provide in-depth insights into its gene function [8,9].
Glucose binds to the ATP-binding domain of Ddx21, altering its conformation, inhibiting helicase activity, and dissociating Ddx21 dimers, which is essential for epidermal differentiation as it promotes the splicing of pro-differentiation genes [1]. Ddx21 mediates co-transcriptional RNA m6A modification, interacting with METTL3 and promoting transcription termination and genome stability, with disruption leading to defective termination and DNA damage [2]. SLERT lncRNA interacts with Ddx21, altering the Ddx21 ring-shaped structures that suppress pre-rRNA transcription, thus controlling ribosome biogenesis [3]. In colorectal cancer, Ddx21 is highly expressed, and its phase separation promotes metastasis via the MCM5-dependent EMT pathway [4]. Ddx21 coordinates transcription and ribosomal RNA processing, associating with Pol I-and Pol II-transcribed genes and promoting rRNA transcription, processing, and modification, as well as facilitating Pol II transcription elongation [5]. In breast cancer, PARP-1 activation by snoRNAs ADP-ribosylates Ddx21, affecting rDNA transcription and ribosome biogenesis [6]. In acute myeloid leukaemia, super-enhancer-driven IGF2BP2 and IGF2BP3 upregulate Ddx21 in an m6A-dependent manner, promoting leukaemia progression [7].
In conclusion, Ddx21 is essential for RNA metabolism, tissue differentiation, and genome stability. Through model-based research, its role in diseases such as cancer (colorectal cancer, breast cancer, acute myeloid leukaemia) has been revealed. Understanding Ddx21 provides potential for developing new strategies for disease treatment and prevention, especially in cancer, where its involvement in multiple oncogenic pathways makes it a promising target for further research [1-6, 8, 9, 10].
References:
1. Miao, Weili, Porter, Douglas F, Lopez-Pajares, Vanessa, Nolan, Garry P, Khavari, Paul A. . Glucose dissociates DDX21 dimers to regulate mRNA splicing and tissue differentiation. In Cell, 186, 80-97.e26. doi:10.1016/j.cell.2022.12.004. https://pubmed.ncbi.nlm.nih.gov/36608661/
2. Hao, Jin-Dong, Liu, Qian-Lan, Liu, Meng-Xia, Yang, Yun-Gui, Ren, Jie. 2024. DDX21 mediates co-transcriptional RNA m6A modification to promote transcription termination and genome stability. In Molecular cell, 84, 1711-1726.e11. doi:10.1016/j.molcel.2024.03.006. https://pubmed.ncbi.nlm.nih.gov/38569554/
3. Xing, Yu-Hang, Yao, Run-Wen, Zhang, Yang, Yang, Li, Chen, Ling-Ling. . SLERT Regulates DDX21 Rings Associated with Pol I Transcription. In Cell, 169, 664-678.e16. doi:10.1016/j.cell.2017.04.011. https://pubmed.ncbi.nlm.nih.gov/28475895/
4. Gao, Huabin, Wei, Huiting, Yang, Yang, Wang, Jia, Han, Anjia. 2023. Phase separation of DDX21 promotes colorectal cancer metastasis via MCM5-dependent EMT pathway. In Oncogene, 42, 1704-1715. doi:10.1038/s41388-023-02687-6. https://pubmed.ncbi.nlm.nih.gov/37029300/
5. Calo, Eliezer, Flynn, Ryan A, Martin, Lance, Chang, Howard Y, Wysocka, Joanna. 2014. RNA helicase DDX21 coordinates transcription and ribosomal RNA processing. In Nature, 518, 249-53. doi:10.1038/nature13923. https://pubmed.ncbi.nlm.nih.gov/25470060/
6. Kim, Dae-Seok, Camacho, Cristel V, Nagari, Anusha, Challa, Sridevi, Kraus, W Lee. 2019. Activation of PARP-1 by snoRNAs Controls Ribosome Biogenesis and Cell Growth via the RNA Helicase DDX21. In Molecular cell, 75, 1270-1285.e14. doi:10.1016/j.molcel.2019.06.020. https://pubmed.ncbi.nlm.nih.gov/31351877/
7. Zhao, Yanchun, Zhou, Yutong, Qian, Yu, Sun, Jie, Jin, Jie. . m6A-dependent upregulation of DDX21 by super-enhancer-driven IGF2BP2 and IGF2BP3 facilitates progression of acute myeloid leukaemia. In Clinical and translational medicine, 14, e1628. doi:10.1002/ctm2.1628. https://pubmed.ncbi.nlm.nih.gov/38572589/
8. Xiao, Yalan, Fan, Jiankun, Li, Zhigang, Hou, Yu. 2024. DDX21 at the Nexus of RNA Metabolism, Cancer Oncogenesis, and Host-Virus Crosstalk: Decoding Its Biomarker Potential and Therapeutic Implications. In International journal of molecular sciences, 25, . doi:10.3390/ijms252413581. https://pubmed.ncbi.nlm.nih.gov/39769343/
9. Wang, Shaoshuai, Yang, Ruiqi, Song, Mengzhen, Dai, Chen, Song, Tongxing. 2024. Current understanding of the role of DDX21 in orchestrating gene expression in health and diseases. In Life sciences, 349, 122716. doi:10.1016/j.lfs.2024.122716. https://pubmed.ncbi.nlm.nih.gov/38762067/
Quality Control Standard
Sperm Test
Pre-cryopreservation: Measurement of sperm concentration, determination of sperm viability.
Post-cryopreservation: A vial of cryopreserved sperms is selected for in-vitro fertilization from each batch.
Environmental Standards:SPF
Available Region:Global
Source:Cyagen