C57BL/6JCya-Ctcfem1/Cya
Common Name:
Ctcf-KO
Product ID:
S-KO-01680
Background:
C57BL/6JCya
Product Type
Age
Genotype
Sex
Quantity
Price:
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Basic Information
Strain Name
Ctcf-KO
Strain ID
KOCMP-13018-Ctcf-B6J-VA
Gene Name
Product ID
S-KO-01680
Gene Alias
-
Background
C57BL/6JCya
NCBI ID
Modification
Conventional knockout
Chromosome
8
Phenotype
Document
Application
--
Note: When using this mouse strain in a publication, please cite “C57BL/6JCya-Ctcfem1/Cya mice (Catalog S-KO-01680) were purchased from Cyagen.”
Strain Description
Ensembl Number
ENSMUST00000005841
NCBI RefSeq
NM_181322
Target Region
Exon 5
Size of Effective Region
~1.5 kb
Detailed Document
Overview of Gene Research
Ctcf, also known as CCCTC-binding factor, is a ubiquitously expressed architectural protein that plays crucial roles in chromatin organization and gene regulation. It is involved in various biological processes such as transcriptional inhibition/activation, insulation, gene imprinting, and regulation of 3D chromatin structure [2]. Ctcf-mediated chromatin loops are important for enhancer-promoter interactions and cell fate specification [4,5]. Additionally, Ctcf has been linked to alternative splicing, further contributing to transcriptomic complexity [3].
In myogenic differentiation, the cooperation between Ctcf and lineage-specific pioneer transcription factors was validated using MyoD-null mice, Ctcf knockout mice, and CRISPR editing. Pioneer TFs facilitate Ctcf occupancy at lineage-specific sites, and together they form regulatory hubs to govern cell identity gene expression [4]. During pancreatic cell differentiation, Ctcf loops are formed and disassembled at different stages. New Ctcf loops lead to strengthened enhancer-promoter interactions and increased transcription of adjacent genes [5].
In conclusion, Ctcf is a key regulator in multiple biological processes, including cell fate specification and differentiation. The use of gene knockout mouse models in functional studies has provided insights into how Ctcf functions in these processes. Understanding Ctcf's role may contribute to a better understanding of diseases, such as cancer, where its genetic alterations have been identified [1].
References:
1. Debaugny, Roxanne E, Skok, Jane A. 2020. CTCF and CTCFL in cancer. In Current opinion in genetics & development, 61, 44-52. doi:10.1016/j.gde.2020.02.021. https://pubmed.ncbi.nlm.nih.gov/32334335/
2. Liu, Fangming, Wu, Duojiao, Wang, Xiangdong. 2018. Roles of CTCF in conformation and functions of chromosome. In Seminars in cell & developmental biology, 90, 168-173. doi:10.1016/j.semcdb.2018.07.021. https://pubmed.ncbi.nlm.nih.gov/30031212/
3. Alharbi, Adel B, Schmitz, Ulf, Bailey, Charles G, Rasko, John E J. . CTCF as a regulator of alternative splicing: new tricks for an old player. In Nucleic acids research, 49, 7825-7838. doi:10.1093/nar/gkab520. https://pubmed.ncbi.nlm.nih.gov/34181707/
4. Liu, Yuting, Wan, Xin, Li, Hu, Li, Cheng, Zhang, Yong. 2023. CTCF coordinates cell fate specification via orchestrating regulatory hubs with pioneer transcription factors. In Cell reports, 42, 113259. doi:10.1016/j.celrep.2023.113259. https://pubmed.ncbi.nlm.nih.gov/37851578/
5. Lyu, Xiaowen, Rowley, M Jordan, Kulik, Michael J, Dalton, Stephen, Corces, Victor G. 2023. Regulation of CTCF loop formation during pancreatic cell differentiation. In Nature communications, 14, 6314. doi:10.1038/s41467-023-41964-6. https://pubmed.ncbi.nlm.nih.gov/37813869/
Quality Control Standard
Sperm Test
Pre-cryopreservation: Measurement of sperm concentration, determination of sperm viability.
Post-cryopreservation: A vial of cryopreserved sperms is selected for in-vitro fertilization from each batch.
Environmental Standards:SPF
Available Region:Global
Source:Cyagen