C57BL/6NCya-Ddx21em1flox/Cya
Common Name:
Ddx21-flox
Product ID:
S-CKO-11975
Background:
C57BL/6NCya
Product Type
Age
Genotype
Sex
Quantity
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Basic Information
Strain Name
Ddx21-flox
Strain ID
CKOCMP-56200-Ddx21-B6N-VA
Gene Name
Product ID
S-CKO-11975
Gene Alias
D10Ertd645e; D10Wsu42e
Background
C57BL/6NCya
NCBI ID
Modification
Conditional knockout
Chromosome
10
Phenotype
Document
Application
--
Note: When using this mouse strain in a publication, please cite “C57BL/6NCya-Ddx21em1flox/Cya mice (Catalog S-CKO-11975) were purchased from Cyagen.”
Strain Description
Ensembl Number
ENSMUST00000045866
NCBI RefSeq
NM_019553
Target Region
Exon 3~5
Size of Effective Region
~3.3 kb
Detailed Document
Overview of Gene Research
Ddx21, a member of the DEAD-box RNA helicase family, is pivotal in RNA metabolism, including ribosomal RNA (rRNA) processing, transcription, and translation. It is involved in diverse biological processes such as mRNA transcription, where it interacts with transcription factors, modulates RNA polymerase II elongation, binds R-loops, and participates in alternative splicing. It also has a role in ribosome biogenesis and genome stability, and its dysregulation is associated with cancer progression and potentially other diseases [4,5].
Glucose binds to the ATP-binding domain of Ddx21, altering its conformation, inhibiting helicase activity, and dissociating its dimers. This leads to Ddx21 re-localization during differentiation, promoting the splicing of pro-differentiation genes [1]. Ddx21 interacts with METTL3 for co-recruitment to chromatin via R-loops, facilitating m6A deposition on nascent RNA and transcription termination. Disrupting this process can induce DNA damage [2]. In colorectal cancer, phase-separated Ddx21 binds to the MCM5 gene locus, promoting metastasis through the EMT pathway [3].
In summary, Ddx21 has multifaceted functions in RNA metabolism and is involved in processes like tissue differentiation, transcription termination, and cancer metastasis. Studies on Ddx21, including those potentially using KO/CKO mouse models, help us understand its role in these biological processes and diseases, providing insights for potential biomarker and therapeutic target development [4,5].
References:
1. Miao, Weili, Porter, Douglas F, Lopez-Pajares, Vanessa, Nolan, Garry P, Khavari, Paul A. . Glucose dissociates DDX21 dimers to regulate mRNA splicing and tissue differentiation. In Cell, 186, 80-97.e26. doi:10.1016/j.cell.2022.12.004. https://pubmed.ncbi.nlm.nih.gov/36608661/
2. Hao, Jin-Dong, Liu, Qian-Lan, Liu, Meng-Xia, Yang, Yun-Gui, Ren, Jie. 2024. DDX21 mediates co-transcriptional RNA m6A modification to promote transcription termination and genome stability. In Molecular cell, 84, 1711-1726.e11. doi:10.1016/j.molcel.2024.03.006. https://pubmed.ncbi.nlm.nih.gov/38569554/
3. Gao, Huabin, Wei, Huiting, Yang, Yang, Wang, Jia, Han, Anjia. 2023. Phase separation of DDX21 promotes colorectal cancer metastasis via MCM5-dependent EMT pathway. In Oncogene, 42, 1704-1715. doi:10.1038/s41388-023-02687-6. https://pubmed.ncbi.nlm.nih.gov/37029300/
4. Xiao, Yalan, Fan, Jiankun, Li, Zhigang, Hou, Yu. 2024. DDX21 at the Nexus of RNA Metabolism, Cancer Oncogenesis, and Host-Virus Crosstalk: Decoding Its Biomarker Potential and Therapeutic Implications. In International journal of molecular sciences, 25, . doi:10.3390/ijms252413581. https://pubmed.ncbi.nlm.nih.gov/39769343/
5. Wang, Shaoshuai, Yang, Ruiqi, Song, Mengzhen, Dai, Chen, Song, Tongxing. 2024. Current understanding of the role of DDX21 in orchestrating gene expression in health and diseases. In Life sciences, 349, 122716. doi:10.1016/j.lfs.2024.122716. https://pubmed.ncbi.nlm.nih.gov/38762067/
Quality Control Standard
Sperm Test
Pre-cryopreservation: Measurement of sperm concentration, determination of sperm viability.
Post-cryopreservation: A vial of cryopreserved sperms is selected for in-vitro fertilization from each batch.
Environmental Standards:SPF
Available Region:Global
Source:Cyagen