C57BL/6JCya-Ddx21em1/Cya
Common Name:
Ddx21-KO
Product ID:
S-KO-16380
Background:
C57BL/6JCya
Product Type
Age
Genotype
Sex
Quantity
Price:
Contact for Pricing
Basic Information
Strain Name
Ddx21-KO
Strain ID
KOCMP-56200-Ddx21-B6J-VB
Gene Name
Product ID
S-KO-16380
Gene Alias
D10Ertd645e; D10Wsu42e
Background
C57BL/6JCya
NCBI ID
Modification
Conventional knockout
Chromosome
10
Phenotype
Document
Application
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Note: When using this mouse strain in a publication, please cite “C57BL/6JCya-Ddx21em1/Cya mice (Catalog S-KO-16380) were purchased from Cyagen.”
Strain Description
Ensembl Number
ENSMUST00000045866
NCBI RefSeq
NM_019553
Target Region
Exon 2~11
Size of Effective Region
~13.3 kb
Detailed Document
Overview of Gene Research
Ddx21, a member of the DEAD-box RNA helicase family, is pivotal in multiple RNA metabolic processes such as ribosomal RNA (rRNA) processing, transcription, and translation. It is involved in pathways like mRNA splicing, co-transcriptional RNA m6A modification, and ribosome biogenesis, and is of great biological importance in tissue differentiation, cancer progression, and host-virus crosstalk [1,2,3,4,5,7]. Genetic models are valuable for studying its functions.
In epidermal differentiation, glucose binds to the ATP-binding domain of Ddx21, altering its conformation, inhibiting helicase activity, and dissociating its dimers. This leads to Ddx21 re-localization and promotion of pro-differentiation gene splicing [1]. Ddx21 also mediates co-transcriptional RNA m6A modification by interacting with METTL3, promoting transcription termination and genome stability. Loss of Ddx21 leads to defective termination and DNA damage [2]. In ribosome biogenesis, Ddx21 senses the transcriptional status of RNA polymerases I and II, and its disruption impairs rRNA transcription and production [3,5]. In colorectal cancer, high Ddx21 expression promotes metastasis via phase separation and the MCM5-dependent EMT pathway [4]. In acute myeloid leukaemia, knockdown of Ddx21 inhibits cell proliferation, promotes apoptosis, and causes cell cycle arrest [6].
In conclusion, Ddx21 is essential for RNA metabolism, playing key roles in tissue differentiation, cancer progression, and maintaining genome stability. Model-based research, such as gene knockout studies in relevant contexts, has revealed its functions in these biological processes and disease areas, contributing to our understanding of the underlying mechanisms and potentially paving the way for novel therapeutic strategies.
References:
1. Miao, Weili, Porter, Douglas F, Lopez-Pajares, Vanessa, Nolan, Garry P, Khavari, Paul A. . Glucose dissociates DDX21 dimers to regulate mRNA splicing and tissue differentiation. In Cell, 186, 80-97.e26. doi:10.1016/j.cell.2022.12.004. https://pubmed.ncbi.nlm.nih.gov/36608661/
2. Hao, Jin-Dong, Liu, Qian-Lan, Liu, Meng-Xia, Yang, Yun-Gui, Ren, Jie. 2024. DDX21 mediates co-transcriptional RNA m6A modification to promote transcription termination and genome stability. In Molecular cell, 84, 1711-1726.e11. doi:10.1016/j.molcel.2024.03.006. https://pubmed.ncbi.nlm.nih.gov/38569554/
3. Xing, Yu-Hang, Yao, Run-Wen, Zhang, Yang, Yang, Li, Chen, Ling-Ling. . SLERT Regulates DDX21 Rings Associated with Pol I Transcription. In Cell, 169, 664-678.e16. doi:10.1016/j.cell.2017.04.011. https://pubmed.ncbi.nlm.nih.gov/28475895/
4. Gao, Huabin, Wei, Huiting, Yang, Yang, Wang, Jia, Han, Anjia. 2023. Phase separation of DDX21 promotes colorectal cancer metastasis via MCM5-dependent EMT pathway. In Oncogene, 42, 1704-1715. doi:10.1038/s41388-023-02687-6. https://pubmed.ncbi.nlm.nih.gov/37029300/
5. Calo, Eliezer, Flynn, Ryan A, Martin, Lance, Chang, Howard Y, Wysocka, Joanna. 2014. RNA helicase DDX21 coordinates transcription and ribosomal RNA processing. In Nature, 518, 249-53. doi:10.1038/nature13923. https://pubmed.ncbi.nlm.nih.gov/25470060/
6. Zhao, Yanchun, Zhou, Yutong, Qian, Yu, Sun, Jie, Jin, Jie. . m6A-dependent upregulation of DDX21 by super-enhancer-driven IGF2BP2 and IGF2BP3 facilitates progression of acute myeloid leukaemia. In Clinical and translational medicine, 14, e1628. doi:10.1002/ctm2.1628. https://pubmed.ncbi.nlm.nih.gov/38572589/
7. Xiao, Yalan, Fan, Jiankun, Li, Zhigang, Hou, Yu. 2024. DDX21 at the Nexus of RNA Metabolism, Cancer Oncogenesis, and Host-Virus Crosstalk: Decoding Its Biomarker Potential and Therapeutic Implications. In International journal of molecular sciences, 25, . doi:10.3390/ijms252413581. https://pubmed.ncbi.nlm.nih.gov/39769343/
Quality Control Standard
Sperm Test
Pre-cryopreservation: Measurement of sperm concentration, determination of sperm viability.
Post-cryopreservation: A vial of cryopreserved sperms is selected for in-vitro fertilization from each batch.
Environmental Standards:SPF
Available Region:Global
Source:Cyagen