C57BL/6JCya-Dbr1em1flox/Cya
Common Name
Dbr1-flox
Product ID
S-CKO-18167
Backgroud
C57BL/6JCya
Strain ID
CKOCMP-83703-Dbr1-B6J-VB
Status
When using this mouse strain in a publication, please cite “Dbr1-flox Mouse (Catalog S-CKO-18167) were purchased from Cyagen.”
Product Type
Age
Genotype
Sex
Quantity
The standard delivery applies for a guaranteed minimum of three heterozygous carriers. Breeding services for homozygous carriers and/or specified sex are available.
Basic Information
Strain Name
Dbr1-flox
Strain ID
CKOCMP-83703-Dbr1-B6J-VB
Gene Name
Product ID
S-CKO-18167
Gene Alias
--
Background
C57BL/6JCya
NCBI ID
Modification
Conditional knockout
Chromosome
Chr 9
Phenotype
Datasheet
Application
--
Strain Description
Ensembl Number
ENSMUST00000066650
NCBI RefSeq
NM_031403
Target Region
Exon 3~5
Size of Effective Region
~2.4 kb
Overview of Gene Research
Dbr1, short for RNA DEBRANCHING ENZYME 1, is a rate-limiting enzyme in the lariat intronic RNA (lariRNA) decay process. During pre-mRNA splicing, introns are removed as branched lariat RNAs, and Dbr1 debranches them in the rate-limiting step of lariat turnover. This process is crucial for intron recycling and likely regulates the production of translation-competent mRNAs [2,3,5].
In plant studies, sequestration of Dbr1 into stress granules (SGs) by SICKLE (SIC) enhances lariRNA accumulation, which promotes the transcription of heat-stress tolerance genes, highlighting its role in plant heat-stress responses [1]. In human cells, Dbr1 depletion leads to a 20-fold increase in lariats and increased exon skipping, indicating its role in proper splicing and spliceosome recycling [3,5]. Inherited DBR1 deficiency in humans is associated with brainstem viral encephalitis, as DBR1-deficient cells have impaired stress granule assembly, which in turn impairs PKR-mediated antiviral immunity [4,6]. A founder DBR1 variant also causes a lethal form of congenital ichthyosis [7]. In esophageal squamous cell carcinoma, lower DBR1 expression is associated with a worse prognosis [8].
In summary, Dbr1 is essential for lariat intronic RNA decay, which impacts mRNA processing, intron turnover, and splicing. Studies on Dbr1-related genetic models, such as human DBR1-deficient cases, have revealed its importance in various biological processes and disease conditions, including plant heat-stress tolerance, viral encephalitis, congenital ichthyosis, and esophageal squamous cell carcinoma prognosis.
References:
1. Wu, Chengyun, Wang, Xingsong, Li, Yan, Song, Chun-Peng, Hu, Zhubing. 2024. Sequestration of DBR1 to stress granules promotes lariat intronic RNAs accumulation for heat-stress tolerance. In Nature communications, 15, 7696. doi:10.1038/s41467-024-52034-w. https://pubmed.ncbi.nlm.nih.gov/39227617/
2. Mohanta, Arundhati, Chakrabarti, Kausik. 2020. Dbr1 functions in mRNA processing, intron turnover and human diseases. In Biochimie, 180, 134-142. doi:10.1016/j.biochi.2020.10.003. https://pubmed.ncbi.nlm.nih.gov/33038423/
3. Buerer, Luke, Clark, Nathaniel E, Welch, Anastasia, Mosammaparast, Nima, Fairbrother, William G. 2024. The debranching enzyme Dbr1 regulates lariat turnover and intron splicing. In Nature communications, 15, 4617. doi:10.1038/s41467-024-48696-1. https://pubmed.ncbi.nlm.nih.gov/38816363/
4. Chan, Yi-Hao, Lundberg, Vanja, Le Pen, Jérémie, Ekwall, Olov, Zhang, Shen-Ying. 2024. SARS-CoV-2 brainstem encephalitis in human inherited DBR1 deficiency. In The Journal of experimental medicine, 221, . doi:10.1084/jem.20231725. https://pubmed.ncbi.nlm.nih.gov/39023559/
5. Buerer, Luke, Clark, Nathaniel E, Welch, Anastasia, Mosammaparast, Nima, Fairbrother, William G. 2023. The debranching enzyme Dbr1 regulates lariat turnover and intron splicing. In Research square, , . doi:10.21203/rs.3.rs-2931976/v1. https://pubmed.ncbi.nlm.nih.gov/37398028/
6. Ru, Shuo, Tang, Sisi, Xu, Hui, Zhang, Shen-Ying, Gao, Daxing. 2024. Human DBR1 deficiency impairs stress granule-dependent PKR antiviral immunity. In The Journal of experimental medicine, 222, . doi:10.1084/jem.20240010. https://pubmed.ncbi.nlm.nih.gov/39636299/
7. Shamseldin, Hanan E, Sadagopan, Mukunth, Martini, Javier, Bertoli-Avella, Aida, Alkuraya, Fowzan S. 2023. A founder DBR1 variant causes a lethal form of congenital ichthyosis. In Human genetics, 142, 1491-1498. doi:10.1007/s00439-023-02597-3. https://pubmed.ncbi.nlm.nih.gov/37656279/
8. Xu, Xiaoqin, Yang, Xin, Liu, Xue, Cheng, Xiaolong, Xi, Yanfeng. . The Role of DBR1 as a Candidate Prognosis Biomarker in Esophageal Squamous Cell Carcinoma. In Technology in cancer research & treatment, 21, 15330338221083105. doi:10.1177/15330338221083105. https://pubmed.ncbi.nlm.nih.gov/35244467/
Quality Control Standard
Sperm Test
Pre-cryopreservation: Measurement of sperm concentration, determination of sperm viability.
Post-cryopreservation: A vial of cryopreserved sperms is selected for in-vitro fertilization from each batch.
Environmental Standards:SPF
Available Region:Global
Source:Cyagen
Contact Us
Connect with our experts for your custom animal model needs. Please fill out the form below to start a conversation or request a quote.
Cyagen values your privacy. We’d like to keep you informed about our latest offerings and insights. Your preferences:
You may unsubscribe from these communications at any time. See our Privacy Policy for details on opting out and data protection.
By clicking the button below, you consent to allow Cyagen to store and process the personal information submitted in this form to provide you the content requested.
