C57BL/6JCya-Atg16l1em1flox/Cya
Common Name:
Atg16l1-flox
Product ID:
S-CKO-16637
Background:
C57BL/6JCya
Product Type
Age
Genotype
Sex
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Basic Information
Strain Name
Atg16l1-flox
Strain ID
CKOCMP-77040-Atg16l1-B6J-VA
Gene Name
Product ID
S-CKO-16637
Gene Alias
1500009K01Rik; Apg16l; Atg16l; WDR30
Background
C57BL/6JCya
NCBI ID
Modification
Conditional knockout
Chromosome
1
Phenotype
Document
Application
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Note: When using this mouse strain in a publication, please cite “C57BL/6JCya-Atg16l1em1flox/Cya mice (Catalog S-CKO-16637) were purchased from Cyagen.”
Strain Description
Ensembl Number
ENSMUST00000113190
NCBI RefSeq
NM_001205391
Target Region
Exon 3
Size of Effective Region
~1.2 kb
Detailed Document
Overview of Gene Research
Atg16l1, also known as autophagy related 16-like 1, is a key player in autophagy. It is part of the ATG12-ATG5/Atg16l1 complex, which, like its yeast counterpart, is crucial for autophagosome formation. Autophagy is a fundamental cellular catabolic process that recycles cytoplasmic components and plays essential roles in development, immunity, and cell death [1,2].
In colorectal cancer, deletion of Atg16l1 in engineered murine colon cancer organoids inhibits tumor growth in primary and metastatic niches, due to increased sensitivity to IFN-γ-mediated immune pressure. High tumor expression of Atg16l1 is associated with poor response to anti-PD-L1 therapy in KRAS-mutant tumors [3].
In metabolic dysfunction-associated steatohepatitis (MASH), macrophage-specific Atg16l1 knockout exacerbates MASH, while transgenic overexpression attenuates it. Atg16l1 knockout inhibits macrophage lipophagy, leading to downstream effects promoting hepatic steatosis and stellate cell activation [4].
In conclusion, Atg16l1 is essential for autophagosome formation and autophagy. Studies using gene knockout mouse models have revealed its significance in diseases such as colorectal cancer and MASH. In colorectal cancer, it influences anti-tumor immunity, and in MASH, it modulates macrophage-related inflammation and metabolism through lipophagy, providing insights into potential therapeutic targets for these diseases.
References:
1. Hamaoui, Daniel, Subtil, Agathe. 2021. ATG16L1 functions in cell homeostasis beyond autophagy. In The FEBS journal, 289, 1779-1800. doi:10.1111/febs.15833. https://pubmed.ncbi.nlm.nih.gov/33752267/
2. Wei, Fujing, Wang, Yu, Yao, Jia, Kong, Eryan, Yang, Aimin. 2024. ZDHHC7-mediated S-palmitoylation of ATG16L1 facilitates LC3 lipidation and autophagosome formation. In Autophagy, 20, 2719-2737. doi:10.1080/15548627.2024.2386915. https://pubmed.ncbi.nlm.nih.gov/39087410/
3. Taraborrelli, Lucia, Şenbabaoğlu, Yasin, Wang, Lifen, West, Nathaniel R, Murthy, Aditya. 2023. Tumor-intrinsic expression of the autophagy gene Atg16l1 suppresses anti-tumor immunity in colorectal cancer. In Nature communications, 14, 5945. doi:10.1038/s41467-023-41618-7. https://pubmed.ncbi.nlm.nih.gov/37741832/
4. Wang, Qi, Bu, Qingfa, Xu, Zibo, Zhou, Haoming, Lu, Ling. 2024. Macrophage ATG16L1 expression suppresses metabolic dysfunction-associated steatohepatitis progression by promoting lipophagy. In Clinical and molecular hepatology, 30, 515-538. doi:10.3350/cmh.2024.0107. https://pubmed.ncbi.nlm.nih.gov/38726504/
Quality Control Standard
Sperm Test
Pre-cryopreservation: Measurement of sperm concentration, determination of sperm viability.
Post-cryopreservation: A vial of cryopreserved sperms is selected for in-vitro fertilization from each batch.
Environmental Standards:SPF
Available Region:Global
Source:Cyagen